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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs16926123 chr10:25865744 A/G 7.69E-13 407 7.18 13.2 15.77 KM Plot
LGG rs16927179 chr9:1302747 C/T 0.000162 407 15.47 13.12 44.5 KM Plot
LGG rs16927233 chr9:126949286 C/T 1.23E-6 407 15.57 10.68 12.92 KM Plot
LGG rs16927298 chr10:71865088 G/A 6.71E-5 403 15.73 13.23 8.78 KM Plot
LGG rs16927300 chr10:71865408 T/G 6.71E-5 403 15.73 13.23 8.78 KM Plot
LGG rs16928841 chr11:2969112 A/G 8.06E-6 407 15.53 14.73 15.6 KM Plot
LGG rs16928941 chr11:2991470 C/T 0.000168 398 15.6 13.7 11.8 KM Plot
LGG rs16928945 chr11:2992160 A/C 0.000168 398 15.6 13.7 11.8 KM Plot
LGG rs16929046 chr11:3046401 A/G 3.56E-5 407 15.78 13.63 19.27 KM Plot
LGG rs16929671 chr10:73865905 A/G 3.27E-5 407 0 12.27 15.63 KM Plot
LGG rs16938744 chr8:49685779 T/A 5.55E-16 407 15.7 13.13 5.17 KM Plot
LGG rs16957590 chr16:67934725 C/T 2.16E-11 407 6.47 18.37 15.17 KM Plot
LGG rs16983552 chr2:17564763 C/T 6.9E-5 401 15.17 16.6 5.23 KM Plot
LGG rs16991623 chr22:44579500 A/C 0.000107 407 6.63 15.13 15.35 KM Plot
LGG rs17007459 chr2:29247845 A/C 0.000144 407 4.15 20.67 14.53 KM Plot